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1

The genetic history of Cochin Jews from India

Waldman, Yedael Y., Biddanda, Arjun, Dubrovsky, Maya, Campbell, Christopher L., Oddoux, Carole, Friedman, Eitan, Atzmon, Gil, Halperin, Eran, Ostrer, Harry, Keinan, Alon

Journal:

Year:

2016

Language:

english

File:

PDF, 3.95 MB

english, 2016

2

National and transnational borderlanders’ attitudes towards the security fence between Israel and the Palestinian Authority

Alon Gelbman, Ofra Keinan

Journal:

Year:

2007

Language:

english

File:

PDF, 316 KB

english, 2007

3

The History of African Gene Flow into Southern Europeans, Levantines, and Jews

Moorjani, Priya, Patterson, Nick, Hirschhorn, Joel N., Keinan, Alon, Hao, Li, Atzmon, Gil, Burns, Edward, Ostrer, Harry, Price, Alkes L., Reich, David, McVean, Gil

Journal:

Year:

2011

Language:

english

File:

PDF, 525 KB

english, 2011

4

Association of mitochondrial DNA variants with myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) symptoms

Hanson, Maureen R., Gu, Zhenglong, Keinan, Alon, Ye, Kaixiong, Germain, Arnaud, Billing-Ross, Paul

Journal:

Journal of Translational Medicine

Year:

2016

Language:

english

File:

PDF, 697 KB

english, 2016

5

Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans

Keinan, Alon, Mullikin, James C, Patterson, Nick, Reich, David

Journal:

Nature Genetics

Year:

2007

Language:

english

File:

PDF, 178 KB

english, 2007

6

Accelerated genetic drift on chromosome X during the human dispersal out of Africa

Keinan, Alon, Mullikin, James C, Patterson, Nick, Reich, David

Journal:

Nature Genetics

Year:

2008

Language:

english

File:

PDF, 293 KB

english, 2008

7

Fair localization of function via multi-lesion analysis

Alon Keinan, Alon Kaufman, Nadia Sachs, Claus C. Hilgetag, Eytan Ruppin

Journal:

Neuroinformatics

Year:

2004

Language:

english

File:

PDF, 169 KB

english, 2004

8

Sex-Averaged Recombination and Mutation Rates on the X Chromosome: A Comment on Labuda et al.

Kirk E. Lohmueller, Jeremiah D. Degenhardt, Alon Keinan

Journal:

The American Journal of Human Genetics

Year:

2010

Language:

english

File:

PDF, 148 KB

english, 2010

9

Causal localization of neural function: the Shapley value method

Alon Keinan, Claus C. Hilgetag, Isaac Meilijson, Eytan Ruppin

Journal:

Year:

2004

Language:

english

File:

PDF, 219 KB

english, 2004

10

Spikes that count: rethinking spikiness in neurally embedded systems

Keren Saggie, Alon Keinan, Eytan Ruppin

Journal:

Year:

2004

Language:

english

File:

PDF, 247 KB

english, 2004

11

Combining Evidence of Natural Selection with Association Analysis Increases Power to Detect Malaria-Resistance Variants

George Ayodo, Alkes L. Price, Alon Keinan, Arthur Ajwang, Michael F. Otieno, Alloys S.S. Orago, Nick Patterson, David Reich

Journal:

The American Journal of Human Genetics

Year:

2007

Language:

english

File:

PDF, 170 KB

english, 2007

12

NRE: a tool for exploring neutral loci in the human genome

Leonardo Arbiza, Elaine Zhong, Alon Keinan

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 192 KB

english, 2012

13

Genome-wide inference of natural selection on human transcription factor binding sites

Arbiza, Leonardo, Gronau, Ilan, Aksoy, Bulent A, Hubisz, Melissa J, Gulko, Brad, Keinan, Alon, Siepel, Adam

Journal:

Nature Genetics

Year:

2013

Language:

english

File:

PDF, 715 KB

english, 2013

14

Contrasting X-Linked and Autosomal Diversity across 14 Human Populations

Arbiza, Leonardo, Gottipati, Srikanth, Siepel, Adam, Keinan, Alon

Journal:

The American Journal of Human Genetics

Year:

2014

Language:

english

File:

PDF, 2.50 MB

english, 2014

15

Rare LPL gene variants attenuate triglyceride reduction and HDL cholesterol increase in response to fenofibric acid therapy in individuals with mixed dyslipidemia

Gao, Feng, Ballantyne, Christie, Ma, Li, Virani, Salim S., Keinan, Alon, Brautbar, Ariel

Journal:

Atherosclerosis

Year:

2014

Language:

english

File:

PDF, 210 KB

english, 2014

16

High burden of private mutations due to explosive human population growth and purifying selection

Gao, Feng, Keinan, Alon

Journal:

Year:

2014

Language:

english

File:

PDF, 400 KB

english, 2014

17

Neurocontroller Analysis via Evolutionary Network Minimization

Ganon, Zohar, Keinan, Alon, Ruppin, Eytan

Journal:

Artificial Life

Year:

2006

Language:

english

File:

PDF, 386 KB

english, 2006

18

Neural Processing of Counting in Evolved Spiking and McCulloch-Pitts Agents

Saggie-Wexler, Keren, Keinan, Alon, Ruppin, Eytan

Journal:

Artificial Life

Year:

2006

Language:

english

File:

PDF, 300 KB

english, 2006

19

The utility of ancient human DNA for improving allele age estimates, with implications for demographic models and tests of natural selection

Sams, Aaron J., Hawks, John, Keinan, Alon

Journal:

Journal of Human Evolution

Year:

2015

Language:

english

File:

PDF, 721 KB

english, 2015

20

Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing

Gottipati, Srikanth, Arbiza, Leonardo, Siepel, Adam, Clark, Andrew G, Keinan, Alon

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 314 KB

english, 2011

21

X-inactivation informs variance-based testing for X-linked association of a quantitative trait

Ma, Li, Hoffman, Gabriel, Keinan, Alon

Journal:

Year:

2015

Language:

english

File:

PDF, 675 KB

english, 2015

22

Fair Attribution of Functional Contribution in Artificial and Biological Networks

Keinan, Alon, Sandbank, Ben, Hilgetag, Claus C., Meilijson, Isaac, Ruppin, Eytan

Journal:

Neural Computation

Year:

2004

Language:

english

File:

PDF, 1.86 MB

english, 2004

23

Knowledge-Driven Analysis Identifies a Gene–Gene Interaction Affecting High-Density Lipoprotein Cholesterol Levels in Multi-Ethnic Populations

Ma, Li, Brautbar, Ariel, Boerwinkle, Eric, Sing, Charles F., Clark, Andrew G., Keinan, Alon, Williams, Scott M.

Journal:

Year:

2012

Language:

english

File:

PDF, 415 KB

english, 2012

24

Human Dominant Disease Genes Are Enriched in Paralogs Originating from Whole Genome Duplication

Singh, Param Priya, Affeldt, Séverine, Malaguti, Giulia, Isambert, Hervé, Keinan, Alon

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 360 KB

english, 2014

25

Historical Pedigree Reconstruction from Extant Populations Using PArtitioning of RElatives (PREPARE)

Shem-Tov, Doron, Halperin, Eran, Keinan, Alon

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.54 MB

english, 2014

26

Comments on "Human Dominant Disease Genes Are Enriched in Paralogs Originating from Whole Genome Duplication"

Chen, Wei-Hua, Zhao, Xing-Ming, van Noort, Vera, Bork, Peer, Keinan, Alon

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 228 KB

english, 2014

27

Enhanced Methods for Local Ancestry Assignment in Sequenced Admixed Individuals

Brown, Robert, Pasaniuc, Bogdan, Keinan, Alon

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 718 KB

english, 2014

28

Predicting Signatures of “Synthetic Associations” and “Natural Associations” from Empirical Patterns of Human Genetic Variation

Chang, Diana, Keinan, Alon, Pe'er, Itsik

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 375 KB

english, 2012

29

Principal Component Analysis Characterizes Shared Pathogenetics from Genome-Wide Association Studies

Chang, Diana, Keinan, Alon, Benson, Mikael

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 996 KB

english, 2014

30

Quantitative Analysis of Genetic and Neuronal Multi-Perturbation Experiments

Kaufman, Alon, Keinan, Alon, Meilijson, Isaac, Kupiec, Martin, Ruppin, Eytan

Journal:

PLoS Computational Biology

Year:

2005

Language:

english

File:

PDF, 161 KB

english, 2005

31

Axiomatic Scalable Neurocontroller Analysis via the Shapley Value

Keinan, Alon, Sandbank, Ben, Hilgetag, Claus C., Meilijson, Isaac, Ruppin, Eytan

Journal:

Artificial Life

Year:

2006

Language:

english

File:

PDF, 468 KB

english, 2006

32

Gene-Based Testing of Interactions in Association Studies of Quantitative Traits

Ma, Li, Clark, Andrew G., Keinan, Alon, Williams, Scott M.

Journal:

Year:

2013

Language:

english

File:

PDF, 412 KB

english, 2013

33

Human Population Differentiation Is Strongly Correlated with Local Recombination Rate

Keinan, Alon, Reich, David, Begun, David J.

Journal:

Year:

2010

Language:

english

File:

PDF, 362 KB

english, 2010

34

Host genetic variation impacts microbiome composition across human body sites

Blekhman, Ran, Goodrich, Julia K., Huang, Katherine, Sun, Qi, Bukowski, Robert, Bell, Jordana T., Spector, Timothy D., Keinan, Alon, Ley, Ruth E., Gevers, Dirk, Clark, Andrew G.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.35 MB

english, 2015

35

Strong constraint on human genes escaping X-inactivation is modulated by their expression level and breadth in both sexes

Slavney, Andrea, Arbiza, Leonardo, Clark, Andrew G., Keinan, Alon

Journal:

Molecular Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.08 MB

english, 2015

36

XWAS: A Software Toolset for Genetic Data Analysis and Association Studies of the X Chromosome

Gao, Feng, Chang, Diana, Biddanda, Arjun, Ma, Li, Guo, Yingjie, Zhou, Zilu, Keinan, Alon

Journal:

Journal of Heredity

Year:

2015

Language:

english

File:

PDF, 652 KB

english, 2015

37

Clustered mutations in hominid genome evolution are consistent with APOBEC3G enzymatic activity

Pinto, Yishay, Gabay, Orshay, Arbiza, Leonardo, Sams, Aaron J., Keinan, Alon, Levanon, Erez Y.

Journal:

Genome Research

Year:

2016

Language:

english

File:

PDF, 420 KB

english, 2016

38

Mitochondrial DNA variants correlate with symptoms in myalgic encephalomyelitis/chronic fatigue syndrome

Billing-Ross, Paul, Germain, Arnaud, Ye, Kaixiong, Keinan, Alon, Gu, Zhenglong, Hanson, Maureen R.

Journal:

Journal of Translational Medicine

Year:

2016

Language:

english

File:

PDF, 1.13 MB

english, 2016

39

National and transnational borderlanders' attitudes towards the security fence between Israel and the Palestinian Authority

Alon Gelbman and Ofra Keinan

Journal:

Year:

2007

Language:

english

File:

PDF, 1.90 MB

english, 2007

40

Explosive genetic evidence for explosive human population growth

Gao, Feng, Keinan, Alon

Journal:

Current Opinion in Genetics & Development

Year:

2016

Language:

english

File:

PDF, 652 KB

english, 2016

41

Dietary adaptation of FADS genes in Europe varied across time and geography

Ye, Kaixiong, Gao, Feng, Wang, David, Bar-Yosef, Ofer, Keinan, Alon

Journal:

Nature Ecology & Evolution

Year:

2017

Language:

english

File:

PDF, 1.30 MB

english, 2017

42

Incomplete Lineage Sorting and Hybridization Statistics for Large-Scale Retroposon Insertion Data

Kuritzin, Andrej, Kischka, Tabea, Schmitz, Jürgen, Churakov, Gennady, Keinan, Alon

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 853 KB

english, 2016

43

Analysis of Multiple Association Studies Provides Evidence of an Expression QTL Hub in Gene-Gene Interaction Network Affecting HDL Cholesterol Levels

Ma, Li, Ballantyne, Christie, Brautbar, Ariel, Keinan, Alon, Yu, Zhaoxia

Journal:

Year:

2014

Language:

english

File:

PDF, 454 KB

english, 2014

44

Combining Sparse Group Lasso and Linear Mixed Model Improves Power to Detect Genetic Variants Underlying Quantitative Traits

Guo, Yingjie, Wu, Chenxi, Guo, Maozu, Zou, Quan, Liu, Xiaoyan, Keinan, Alon

Journal:

Frontiers in Genetics

Year:

2019

Language:

english

File:

PDF, 1.92 MB

english, 2019

45

The Decreasing Incidence of Acute Appendicitis During COVID-19: A Retrospective Multi-centre Study

Tankel, James, Keinan, Aner, Blich, Ori, Koussa, Michael, Helou, Brigitte, Shay, Shahaf, Zugayar, Diaa, Pikarsky, Alon, Mazeh, Haggi, Spira, Ram, Reissman, Petachia

Journal:

World Journal of Surgery

Year:

2020

File:

PDF, 390 KB

2020